Money quotes from the article:
"[General manager Jon Daniels] and Eric had made a lot of progress talking about the new contract," Hicks said. "And then Scott got involved."
Listening to Hicks talk about Agent Evil leads me to think that the owner isn't scared of Boras. But he clearly has grown tired of him, tired of the wedge that Boras drives between player and team.
Like a stray dog, Boras wanders into a neighborhood, does his business and moves on, leaving the local citizenry to contend with the smell. Hicks, the owner, lives here, and so he is left to weather the daily public relations heat.